BtaEX0034147 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32722969-32726047:+
Coord C1 exon
chr15:32722969-32723095
Coord A exon
chr15:32723258-32723427
Coord C2 exon
chr15:32725935-32726047
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTTCTCTTGGCCAGGGT
3' ss Score
8.06
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
AGGAATTAAATGTATACAAAATACAGAATCTTCAGTGGACAGCAGACTTCTCTGGGGATGTAACTTTGACCTGGATACGGCCCAAGAAGATGCCCTCTGCTTCTTGTGTGTATAACGTCTACTACAG
Seq A exon
GGTGGTTGGAGAGAGCATATGGAATACCCTGGAGACCCACAGCAATAAAACGAGCACAGTATTGAAAGTCTTGAAGCCAGACACCACATATCAGGTCAAAGTCCAGGTCCAGTGTCTGAGCAAGGTGCACAGTACCAACGACCTCGTGACCCTGAGGACTCCCGAAGGAT
Seq C2 exon
TGCCAGACGCCCCTCAGAGCCTCCAGCTGTCGCTCCACAGGGAAGTAGAAGGAGTGATCATGGGCCACTGGGCCCCTCCCGTCCATACCCACGGCCTCATTCGGGAGTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.4=86.0)
A:
PF0004116=fn3=PD(51.3=69.0)
C2:
PF0004116=fn3=PU(41.0=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAATACAGAATCTTCAGTGGAC
R:
GATGTACTCCCGAATGAGGCC
Band lengths:
226-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development