GgaEX0009396 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3493848-3498501:-
Coord C1 exon
chr24:3498370-3498501
Coord A exon
chr24:3494211-3494380
Coord C2 exon
chr24:3493848-3493960
Length
170 bp
Sequences
Splice sites
3' ss Seq
GGGGTTTGAATCTCGTGCAGGAT
3' ss Score
5.89
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
CCCAGGAGCCCGAGTTCCACCGCACCTGTGACCAGTTCAGCTTCCAGTGCGCAAACGGGGTGTGCATCAGCCTGGTGTGGAAGTGTGATGGCATGGATGACTGCGGTGATTACTCAGATGAAGCCAGCTGTG
Seq A exon
GATGGTCGGAGAAAGCATCTGGAAGGTTCTGGAAACCCACAGCAACAAAACCAGCAGTGTGTTGAAGGTCCTCAAGCCTGACTGCACCTACCAGGTGAAGGTGCAGGTGCAGTGTCTCAGCAGAGTCTACAATACCAACGACTTCATCACCCTGCGGGTGCCCGAAGGAT
Seq C2 exon
TGCCGGATGCTCCCTTTAACCTCCAGTTGGCCCTCAAAAAGGAAGCTGAGGGGGTGGTGTTGTGCAGCTGGAGTGCCCCTGTGAACGCCCACGGCCTCATACGGGAATTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598_MULTIEX3-7/8=C1-8
Average complexity
C3
Mappability confidence:
88%=88=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.2)
A:
PF0004116=fn3=PD(50.6=67.2)
C2:
PF0004116=fn3=PU(41.7=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGCCCGAGTTCCA
R:
TGAATTCCCGTATGAGGCCGT
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]