GgaEX0009392 @ galGal4
Exon Skipping
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3497173-3498501:-
Coord C1 exon
chr24:3498370-3498501
Coord A exon
chr24:3497560-3497694
Coord C2 exon
chr24:3497173-3497328
Length
135 bp
Sequences
Splice sites
3' ss Seq
AACTCTCCTCTCCTTGTCAGAAA
3' ss Score
6.57
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCCAGGAGCCCGAGTTCCACCGCACCTGTGACCAGTTCAGCTTCCAGTGCGCAAACGGGGTGTGCATCAGCCTGGTGTGGAAGTGTGATGGCATGGATGACTGCGGTGATTACTCAGATGAAGCCAGCTGTG
Seq A exon
AAAACCCAACGGATGCCCCCACCTGCTCCCGGTATTACCAGTTCCAGTGTGGGAATGGGCACTGCATCCCCAACCAGTGGAAGTGTGATGGAGAGAACGACTGCGGGGACTGGTCGGATGAGAAGGAGTGCGAGG
Seq C2 exon
GCTCCCCACTCCTTCCCATCACCACCGCCGTCCCTCCCACCTGCCTCCCCAACCATTTTCGGTGCGGCAGCGGCGCCTGCATCACCAACAGCTGGGTGTGCGATGGGTACCGCGACTGCGCCGACGGCTCCGACGAGGACGCCTGTCCCACCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-'30-42,'30-41,32-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.2)
A:
PF0005713=Ldl_recept_a=WD(100=82.6)
C2:
PF0005713=Ldl_recept_a=WD(100=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACCAGTTCAGCTTCC
R:
GTCCTCGTCGGAGCCGTC
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]