BtaEX6058774 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014611 | SORL1
Description
Bos taurus sortilin-related receptor, L(DLR class) A repeats containing (SORL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192757]
Coordinates
chr15:32715610-32717785:+
Coord C1 exon
chr15:32715610-32715741
Coord A exon
chr15:32716707-32716841
Coord C2 exon
chr15:32717630-32717785
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTGCGGTTCATCCCCCAGAAA
3' ss Score
9.63
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCCGAGACCCCGAGTTCCACAAGGTGTGTGACGAGTTCAGCTTCCAGTGTCAGAACGGAGTGTGCATCAGTTTGATCTGGAAATGTGATGGGATGGATGACTGCGGCGATGACTCCGACGAAGCCAACTGTG
Seq A exon
AAAACCCCACGGAGGCCCCCACCTGCTCCCGCTACTTCCAGTTCCAGTGCGAGAACGGGCACTGCATCCCCAACAGGTGGAAATGTGACCGGGAGAACGACTGCGGGGACTGGTCTGACGAGAAGGACTGCGGAG
Seq C2 exon
ATTCACATATTCTTCCCTCCCCCACTCCCGGGCCCTCCACGTGTCTGCCCAATTACTACCGCTGCAGCAGTGGGGCCTGCGTGATGGACAGCTGGGTGTGCGACGGATATCGAGACTGTATAGACGGCTCGGACGAGGAGGCCTGCCCCTCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014611-'57-41,'57-40,58-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.2)
A:
PF0005713=Ldl_recept_a=WD(100=82.6)
C2:
PF0005713=Ldl_recept_a=WD(100=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGTGACGAGTTCAGCTT
R:
TCGTCCGAGCCGTCTATACAG
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]