MmuEX6065157 @ mm9
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:41808327-41810768:-
Coord C1 exon
chr9:41810637-41810768
Coord A exon
chr9:41809554-41809688
Coord C2 exon
chr9:41808327-41808482
Length
135 bp
Sequences
Splice sites
3' ss Seq
GGTGTGTTTGATCTCTACAGAAA
3' ss Score
7.43
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CGCAAGACCCCGAGTTCCACAAGGAGTGCGATGAGTTCGGCTTCCAGTGTCAGAACGGAGTGTGCATCAGCTTGATTTGGAAATGCGATGGGATGGATGACTGCGGGGACTACTCTGACGAGGCCAACTGTG
Seq A exon
AAAACCCCACGGAAGCCCCAAACTGTTCCCGTTACTTTCAGTTCCACTGTGAGAATGGCCACTGCATCCCCAACAGGTGGAAATGTGACAGAGAGAACGACTGTGGGGACTGGTCTGATGAGAAGGATTGTGGAG
Seq C2 exon
ATTCACATGTTCTACCCTCCCCGACCCCCGGGCCCTCCACGTGTCTGCCCAATTACTTCCACTGCAGCAGCGGGGCCTGTGTGATGGGCACCTGGGTGTGCGACGGCTACAGGGACTGTGCAGATGGCTCTGATGAGGAGGCCTGCCCCTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'34-32,'34-30,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=82.2)
A:
PF0005713=Ldl_recept_a=WD(100=82.6)
C2:
PF0005713=Ldl_recept_a=WD(100=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCCCGAGTTCCACAAG
R:
CATCTGCACAGTCCCTGTAGC
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: