BtaEX0035378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7537952-7541285:+
Coord C1 exon
chr23:7537952-7538018
Coord A exon
chr23:7539885-7539956
Coord C2 exon
chr23:7541164-7541285
Length
72 bp
Sequences
Splice sites
3' ss Seq
TAACACTCTGCTACTCATAGCTT
3' ss Score
3.56
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGAGCAGGTCTCGCGCCTCCATCCATCGGGGGAGCATCCCCGCGATGTCCTATGCCCCCTTCAGAG
Seq A exon
CTTTTAGTTGGAATGAAGTTCACTGGCCAGTTCTTTTCCTGCAATATTCCCATGATTAATTATCCTGGAAAG
Seq C2 exon
ATGTACGGGGACCCCCTATGCACCGAACCCAATACGTTCACTCCCCGTATGATCGTCCTGGTTGGAACCCTCGGTTCTGCATCATCTCGGGGAACCAGCTTCTCATGCTGGATGAGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(14.9=80.5)
Main Inclusion Isoform:
ENSBTAT00000027936fB6885
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGCGCCTCCATCCAT
R:
GCATGAGAAGCTGGTTCCCC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development