Special

ENSBTAG00000020975 @ bosTau6

Biotype
protein_coding
Gene Symbol
SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7537952-7566784:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
40.44
93.94
0
Alternative 3'ss
193
chr23:7556424-7556616
+
59.03
92.86
0
Alternative 3'ss
0
NA
+
23.08
20.85
0
Alternative 3'ss
6
chr23:7561126-7561131
+
76.92
20.85
0
Alternative 3'ss
0
NA
+
80.64
26.01
4
Alternative 3'ss
13
chr23:7562390-7562402
+
19.36
26.01
4
Exon Skipping
42
chr23:7558078-7558119
+
15.35
64.52
0
Exon Skipping
72
chr23:7539885-7539956
+
10.9
31.82
0
Exon Skipping
80
chr23:7563353-7563432
+
78.13
86.98
1
Exon Skipping
126
chr23:7565608-7565733
+
6.44
25.03
0
Intron Retention
3594
chr23:7562494-7566087
+
30.89
65.25
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000197283 SYNGAP1 1-to-1
Human hg19 ENSG00000197283 SYNGAP1 1-to-1
Mouse mm10 ENSMUSG00000067629 Syngap1 1-to-1
Mouse mm9 ENSMUSG00000067629 Syngap1 1-to-1
Rat rn6 ENSRNOG00000000483 Syngap1 1-to-1
Zebrafish danRer10 ENSDARG00000063713 SYNGAP1 (1 of 2) 1-to-2
Zebrafish danRer10 ENSDARG00000069765 SYNGAP1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0261570 CG42684 4-to-1