Special

ENSG00000197283 @ hg38

Biotype
protein_coding
Gene Symbol
SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr6:33419661-33457541:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
32.9
63.63
0
Alternative 3'ss
6
chr6:33446575-33446580
+
67.1
63.63
0
Alternative 3'ss
0
NA
+
75.32
52.72
4
Alternative 3'ss
13
chr6:33447830-33447842
+
24.68
52.72
4
Alternative 3'ss
0
NA
+
27.76
97.98
0
Alternative 3'ss
176
chr6:33440553-33440728
+
70.45
97.98
0
Exon Skipping
154
chr6:33435152-33435305
+
99.63
34.29
0
Exon Skipping
42
chr6:33442453-33442494
+
12.43
94.78
0
Exon Skipping
80
chr6:33448789-33448868
+
62.57
96
1
Exon Skipping
84
chr6:33431945-33432028
+
3.84
23.97
0
Intron Retention
1809
chr6:33438920-33440728
+
39.28
80.46
0
Intron Retention
206
chr6:33441375-33441580
+
5
52.37
0
Intron Retention
483
chr6:33443961-33444443
+
14.98
53.38
0
Intron Retention
1056
chr6:33446787-33447842
+
12.04
22
0
Intron Retention
3826
chr6:33447934-33451759
+
39.79
80.35
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000067629 Syngap1 1-to-1
Mouse mm9 ENSMUSG00000067629 Syngap1 1-to-1
Rat rn6 ENSRNOG00000000483 Syngap1 1-to-1
Cow bosTau6 ENSBTAG00000020975 SYNGAP1 1-to-1
Zebrafish danRer10 ENSDARG00000063713 SYNGAP1 (1 of 2) 1-to-2
Zebrafish danRer10 ENSDARG00000069765 SYNGAP1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0261570 CG42684 4-to-1