Special

ENSRNOG00000000483 @ rn6

Biotype
protein_coding
Gene Symbol
Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5535432-5564437:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]



EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
59.44
100
0
Alternative 3'ss
172
chr20:5553369-5553540
+
21.07
65.38
0
Alternative 3'ss
175
chr20:5553366-5553540
+
19.32
64
0
Alternative 3'ss
0
NA
+
30.76
77.83
0
Alternative 3'ss
6
chr20:5558424-5558429
+
69.11
77.83
0
Alternative 3'ss
0
NA
+
73.16
56.06
4
Alternative 3'ss
13
chr20:5560139-5560151
+
26.78
56.06
4
Exon Skipping
122
chr20:5538784-5538905
+
92.3
19.44
0
Exon Skipping
124
chr20:5539933-5540056
+
1.43
15.91
0
Exon Skipping
42
chr20:5555088-5555129
+
55.8
100
0
Exon Skipping
106
chr20:5540714-5540819
+
93.19
19.53
0
Exon Skipping
80
chr20:5560989-5561068
+
42.74
98.85
1
Intron Retention
3215
chr20:5535569-5538783
+
6.5
26.15
0
Intron Retention
1398
chr20:5552143-5553540
+
22.97
88.07
0
Intron Retention
474
chr20:5556529-5557002
+
16.39
52.36
0
Intron Retention
746
chr20:5560243-5560988
+
12.76
58.75
0
Intron Retention
2749
chr20:5561069-5563817
+
20.87
75
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000197283 SYNGAP1 1-to-1
Human hg19 ENSG00000197283 SYNGAP1 1-to-1
Mouse mm10 ENSMUSG00000067629 Syngap1 1-to-1
Mouse mm9 ENSMUSG00000067629 Syngap1 1-to-1
Cow bosTau6 ENSBTAG00000020975 SYNGAP1 1-to-1
Zebrafish danRer10 ENSDARG00000063713 SYNGAP1 (1 of 2) 1-to-2
Zebrafish danRer10 ENSDARG00000069765 SYNGAP1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0261570 CG42684 4-to-1