RnoEX0088078 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5539466-5540819:+
Coord C1 exon
chr20:5539466-5539566
Coord A exon
chr20:5539933-5540056
Coord C2 exon
chr20:5540714-5540819
Length
124 bp
Sequences
Splice sites
3' ss Seq
GAGGATTTGAAGTCCATTAGGTG
3' ss Score
-3.52
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
TCTGAGGAAGAGCATCGAGAGGAGGAGAGGCCCAAGCAGGCAGGCGATGGACTGTGAGAAGCTATGTGCAGGGACAGGACTGGACTCTCCAGAGGGAGGAG
Seq A exon
GTGGTCTGGGAAAGAGAGAGCCAACATGGGTGGGAGCCAACGCAAGCAGTGACAAGGAAGGAATGAGACATGGAGACCGAAGGGACCCACTAGCCATCCGAGGCCAACAGGAATAGCCTGTCTG
Seq C2 exon
ATACACCCCCTTCTGATCCGCGACCGGAGGAGCGAGTCCAGCCGAAACAAACTGCTGAGACGCACCGTCTCTGTGCCAGTGGAGGGGCGGCCCCACGGCGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'10-10,'10-9,11-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.667 C2=0.806
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=FE(15.8=100)
Main Inclusion Isoform:
ENSRNOT00000000572fB14676
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAGAGCATCGAGAGGA
R:
GCGTCTCAGCAGTTTGTTTCG
Band lengths:
162-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]