RnoEX0088088 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5538784-5546668:+
Coord C1 exon
chr20:5538784-5538905
Coord A exon
chr20:5540714-5540819
Coord C2 exon
chr20:5546577-5546668
Length
106 bp
Sequences
Splice sites
3' ss Seq
CACACTCCCCAATCCCCTAGATA
3' ss Score
8.02
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
ATGTACGGGGACCCCCTATGCACCGAACCCAATACGTTCATTCCCCGTATGACCGTCCCGGTTGGAACCCCCGGTTCTGCATCATCTCTGGGAACCAGCTGCTCATGCTGGATGAGGATGAG
Seq A exon
ATACACCCCCTTCTGATCCGCGACCGGAGGAGCGAGTCCAGCCGAAACAAACTGCTGAGACGCACCGTCTCTGTGCCAGTGGAGGGGCGGCCCCACGGCGAGCATG
Seq C2 exon
AATACCACTTGGGTCGCTCGAGGAGGAAGAGTGTCCCCGGGGGGAAACAGTACAGCATGGAAGCCGCCCCCGCTGCGCCCTTCCGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'8-14,'8-10,15-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=0.806 C2=0.774
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.5=78.0)
A:
PF0016924=PH=FE(15.8=100)
C2:
PF0016924=PH=FE(13.6=100)
Main Skipping Isoform:
ENSRNOT00000000572fB14676
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCTATGCACCGAA
R:
CGGCTTCCATGCTGTACTGTT
Band lengths:
180-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]