RnoEX0088077 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5535432-5540819:+
Coord C1 exon
chr20:5535432-5535568
Coord A exon
chr20:5538784-5538905
Coord C2 exon
chr20:5540714-5540819
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTCTGTCCCCCAGATG
3' ss Score
12.37
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCCTTTCTCTCCCCCTCTTTCTCTCTTCTTTTTCTTCCCCGTCCCCCCCGCCCCCTCCCCCTCAGGCCTGATGAGCAGGTCTCGAGCCTCCATCCATCGGGGGAGCATCCCCGCGATGTCCTATGCCCCCTTCAGAG
Seq A exon
ATGTACGGGGACCCCCTATGCACCGAACCCAATACGTTCATTCCCCGTATGACCGTCCCGGTTGGAACCCCCGGTTCTGCATCATCTCTGGGAACCAGCTGCTCATGCTGGATGAGGATGAG
Seq C2 exon
ATACACCCCCTTCTGATCCGCGACCGGAGGAGCGAGTCCAGCCGAAACAAACTGCTGAGACGCACCGTCTCTGTGCCAGTGGAGGGGCGGCCCCACGGCGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'0-10,'0-4,8-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.584 A=0.305 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(14.5=78.0)
C2:
PF0016924=PH=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCTCTCCCCCTCTTTCT
R:
GCGTCTCAGCAGTTTGTTTCG
Band lengths:
200-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]