Special

ENSMUSG00000067629 @ mm10

Biotype
protein_coding
Gene Symbol
Syngap1
Description
synaptic Ras GTPase activating protein 1 homolog (rat) [Source:MGI Symbol;Acc:MGI:3039785]
Coordinates
chr17:26941253-26972434:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
68.17
49.76
4
Alternative 3'ss
13
chr17:26966870-26966882
+
31.83
49.76
4
Alternative 3'ss
0
NA
+
40.66
100
0
Alternative 3'ss
207
chr17:26959402-26959608
+
57.36
100
0
Alternative 3'ss
90
chr17:26964833-26964922
+
31.65
47.2
0
Alternative 3'ss
96
chr17:26964827-26964922
+
67.96
44.73
0
Exon Skipping
80
chr17:26967681-26967760
+
61.99
96.26
1
Exon Skipping
42
chr17:26961069-26961110
+
24.57
100
0
Exon Skipping
269
chr17:26943802-26944070
+
6.52
20.48
0
Exon Skipping
44
chr17:26944252-26944295
+
3.87
69.85
0
Exon Skipping
122
chr17:26944633-26944754
+
93.87
20.99
0
Exon Skipping
106
chr17:26946633-26946738
+
93.6
25.93
0
Intron Retention
1387
chr17:26958222-26959608
+
18.84
87.6
0
Intron Retention
415
chr17:26962499-26962913
+
27.8
66.45
0
Intron Retention
3525
chr17:26966974-26970498
+
49.83
79.32
0
Intron Retention
191
chr17:26955082-26955272
+
4.54
76.12
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000197283 SYNGAP1 1-to-1
Human hg19 ENSG00000197283 SYNGAP1 1-to-1
Rat rn6 ENSRNOG00000000483 Syngap1 1-to-1
Cow bosTau6 ENSBTAG00000020975 SYNGAP1 1-to-1
Zebrafish danRer10 ENSDARG00000063713 SYNGAP1 (1 of 2) 1-to-2
Zebrafish danRer10 ENSDARG00000069765 SYNGAP1 (2 of 2) 1-to-2
Fruitfly dm6 FBgn0261570 CG42684 4-to-1