BtaEX0035379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7537952-7543493:+
Coord C1 exon
chr23:7537952-7538018
Coord A exon
chr23:7541164-7541285
Coord C2 exon
chr23:7543388-7543493
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTGTATCTCTGCCCCCTAGATG
3' ss Score
9.62
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
ATGAGCAGGTCTCGCGCCTCCATCCATCGGGGGAGCATCCCCGCGATGTCCTATGCCCCCTTCAGAG
Seq A exon
ATGTACGGGGACCCCCTATGCACCGAACCCAATACGTTCACTCCCCGTATGATCGTCCTGGTTGGAACCCTCGGTTCTGCATCATCTCGGGGAACCAGCTTCTCATGCTGGATGAGGACGAG
Seq C2 exon
ATACACCCCCTTCTGATCCGGGACCGGAGGAGCGAGTCCAGTCGCAACAAACTGCTGAGACGCACGGTCTCCGTGCCGGTGGAGGGGCGGCCCCACGGCGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.366 C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=PU(14.9=80.5)
C2:
PF0016924=PH=FE(15.8=100)
Main Skipping Isoform:
ENSBTAT00000027936fB6885
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCAGGTCTCGCGCC
R:
TGCGTCTCAGCAGTTTGTTGC
Band lengths:
131-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development