BtaEX0035375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7541164-7549788:+
Coord C1 exon
chr23:7541164-7541285
Coord A exon
chr23:7543388-7543493
Coord C2 exon
chr23:7549697-7549788
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCCTCCACCGCATCCCCTAGATA
3' ss Score
6.99
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
ATGTACGGGGACCCCCTATGCACCGAACCCAATACGTTCACTCCCCGTATGATCGTCCTGGTTGGAACCCTCGGTTCTGCATCATCTCGGGGAACCAGCTTCTCATGCTGGATGAGGACGAG
Seq A exon
ATACACCCCCTTCTGATCCGGGACCGGAGGAGCGAGTCCAGTCGCAACAAACTGCTGAGACGCACGGTCTCCGTGCCGGTGGAGGGGCGGCCCCACGGCGAGCATG
Seq C2 exon
AATACCACTTGGGTCGCTCGAGGAGGAAGAGTGTCCCAGGGGGGAAGCAGTACAGCATGGAGGCCGCCCCCGCCGCACCCTTCCGGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975-'8-4,'8-2,12-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.833 C2=0.774
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.9=80.5)
A:
PF0016924=PH=FE(15.8=100)
C2:
PF0016924=PH=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCCCTATGCACCGAA
R:
GCCTCCATGCTGTACTGCTTC
Band lengths:
178-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development