RnoEX0088086 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5554273-5556528:+
Coord C1 exon
chr20:5554273-5554451
Coord A exon
chr20:5555088-5555129
Coord C2 exon
chr20:5555457-5556528
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCATCTCTCTCCAGCTC
3' ss Score
10.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAGCCCTCCTGAAGCTGGGCCCGCTGCCCCGGCTCCTCAGCGACATCAGCACAGCCCTGAGGAACCCTAACATCCAAAGGCAGCCGAGCCGCCAGAGCGAGCGCGCTCGGTCTCAGCCCATGGTGCTGCGCGGGCCGTCAGCCGAGATGCAGGGCTACATGATGCGGGACCTCAACAG
Seq A exon
CTCCATCGACCTTCAGTCCTTCATGGCTCGAGGCCTCAACAG
Seq C2 exon
CTCTATGGACATGGCTCGCCTCCCCTCCCCAACCAAGGAGAAACCCCCGCCGCCCCCTCCCGGTGGGGGTAAAGACCTGTTCTATGTGAGCCGGCCACCACTGGCCCGGTCCTCCCCAGCATACTGCACGAGCAGCTCGGACATCACAGAGCCGGAGCAGAAGATGCTGAGTGTCAACAAGAGTGTGTCCATGCTGGACCTGCAGGGCGACGGGCCTGGGGGCCGCCTTAACAGCAGTAGTGTTTCCAACCTGGCAGCTGTTGGGGACCTGTTGCACTCAAGCCAGGCTTCACTGACAGCAGCCTTGGGGTTGCGGCCTGCACCTGCCGGGCGCCTCTCCCAAGGGAGTGGCTCTTCCATCACAGCAGCCGGCATGCGCCTCAGCCAGATGGGTGTCACTACGGATGGTGTCCCCGCCCAGCAACTGCGCATCCCTCTTTCCTTCCAGAACCCTCTCTTCCATATGGCTGCCGATGGACCAGGGCCCCCAGCAGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'35-38,'35-37,37-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=0.000 C2=0.950
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(8.1=78.3)
A:
PF120043=DUF3498=FE(2.4=100)
C2:
PF120043=DUF3498=FE(61.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAACATCCAAAGGCAGCC
R:
GAGGCGAGCCATGTCCATAGA
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]