MmuEX0045970 @ mm9
Exon Skipping
Gene
ENSMUSG00000067629 | Syngap1
Description
synaptic Ras GTPase activating protein 1 homolog (rat) [Source:MGI Symbol;Acc:MGI:3039785]
Coordinates
chr17:27097288-27098909:+
Coord C1 exon
chr17:27097288-27097466
Coord A exon
chr17:27098014-27098055
Coord C2 exon
chr17:27098381-27098909
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCATCTCTCTCCAGCTC
3' ss Score
10.75
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAGCCCTCCTGAAGCTGGGCCCACTGCCCCGGCTCCTCAATGACATCAGCACAGCCCTGAGGAACCCTAACATCCAAAGGCAGCCAAGCCGCCAGAGTGAACGGACTCGGTCTCAGCCCATGGTGCTGCGAGGGCCATCAGCCGAGATGCAGGGCTACATGATGCGGGACCTCAATAG
Seq A exon
CTCCATCGACCTTCAATCCTTCATGGCTCGAGGCCTCAACAG
Seq C2 exon
CTCTATGGACATGGCTCGCCTCCCCTCCCCAACCAAGGAAAAACCACCACCACCACCACCCGGTGGGGGTAAAGACCTTTTCTATGTGAGCCGGCCACCACTGGCCCGGTCCTCCCCAGCATACTGCACGAGCAGCTCGGACATCACAGAGCCAGAGCAGAAGATGCTGAGTGTCAACAAGAGTGTGTCCATGCTGGACCTTCAGGGCGACGGGCCTGGAGGTCGCCTTAACAGTAGCAGTGTTTCCAACCTGGCAGCTGTTGGGGACTTGTTGCATTCCAGCCAGGCCTCGCTGACAGCAGCTTTGGGGTTGCGGCCTGCACCTGCCGGGCGCCTCTCCCAGGGGAGTGGCTCTTCCATCACAGCAGCTGGCATGCGCCTCAGCCAGATGGGGGTCACTACAGATGGTGTCCCCGCCCAGCAACTGCGCATCCCCCTTTCCTTCCAGAACCCTCTCTTCCATATGGCTGCTGATGGGCCAGGGCCCCCAGCAGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067629_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=0.067 C2=0.872
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(13.0=78.3)
A:
PF120043=DUF3498=FE(3.7=100)
C2:
PF120043=DUF3498=FE(48.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAGGGCTACATGATGC
R:
GTGGCCGGCTCACATAGAAAA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: