BtaEX0035377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7557359-7559504:+
Coord C1 exon
chr23:7557359-7557537
Coord A exon
chr23:7558078-7558119
Coord C2 exon
chr23:7558427-7559504
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGCATCTTTCTCCAGCTC
3' ss Score
9.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAGCCCTCCTGAAGCTGGGCCCGCTACCCCGGCTCCTCAATGACATCAGCACGGCTCTGAGGAACCCCAACATCCAGAGGCAGCCGAGCCGGCAGAGCGAGCGGCCCCGGCCTCAGCCCATGGTGCTGCGGGGCCCTTCGGCCGAGATGCAGGGCTACATGATGCGGGACCTCAACAG
Seq A exon
CTCCATCGACCTTCAGTCCTTCATGGCTCGAGGCCTCAACAG
Seq C2 exon
CTCTATGGACATGGCTCGCCTCCCCTCCCCAACCAAGGAGAAGCCCCCGCCACCACCGCCTGGTGGGGGGAAAGACCTGTTCTATGTCAGTCGCCCACCCCTGGCCCGGTCCTCCCCCGCCTACTGCACGAGCAGCTCGGACATCACAGAGCCGGAGCAGAAGATGCTGAGTGTCAACAAGAGTGTCTCCATGCTGGACCTGCAGGGCGACGGGCCCGGCGGCCGCCTCAACAGCAGCAGCGTGTCCAACCTGGCAGCTGTTGGGGACCTGCTGCACTCGAGCCAGGCCTCCCTGACCGCGGCTTTGGGGCTGCGGCCTGCGCCTGCTGGCCGCCTCTCCCAGGGGAGCGGCTCGTCCATCACCGCGGCCGGCATGCGCCTCAGCCAGATGGGCGTCACCACAGACGGTGTCCCTGCCCAGCAACTGCGCATCCCCCTCTCCTTCCAGAATCCTCTCTTCCACATGGCCGCTGATGGGCCAGGCCCCCCAGGGGGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.067 C2=0.953
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PU(7.9=78.3)
A:
PF120043=DUF3498=FE(2.3=100)
C2:
PF120043=DUF3498=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAGGGCTACATGATGC
R:
GGTGGGCGACTGACATAGAAC
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development