BtaEX0035381 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7563294-7566784:+
Coord C1 exon
chr23:7563294-7563432
Coord A exon
chr23:7565608-7565733
Coord C2 exon
chr23:7566088-7566784
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGCACACTCTTTCTTCACAGATA
3' ss Score
9.12
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCTCCCCCCTAGAACCACCAAGGCTCCTGACCCCTTGACCCCACTCTCTCCCCCTGCAGCTCCTCATCAGGTAATTCTCCTGGTTCCGCTTTGACCACGGGCGGAGGACACAGGGGGAGGTGACTCCGGACCACTACAG
Seq A exon
ATAAAGGAAAACTCAAGCCAGTTTTTGTTCAAATTATGAAAAAATTCCAGTCCATGGGGGTTTGGATTAATGAGGTTTTGCTGTACTGCCTTTCCTTGTTCCCTCTGCACTAAGTTCCCACCTCAG
Seq C2 exon
GAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCGTGTGACGCTGGCCCCACCTTGGAACGGCCTGGCCCCCCCAGCCCCACCTCCCCCACCCCGGCTGCAGATCACTGAGAACGGCGAGTTCCGAAACACCGCAGACCACTAGCCCACCCAGCATCTCAGACCTCCTCCTCCCTCCCTGTGCACCCCACCCTGGAACGGCACCAACCACCAGGACTGGACGTCGCCGAGGGACAGCGGGATCGCCTCCTTGAACGCCTCCTTGCGGGGCACCAGTCCCCCACCCCCACTGCACCATTTCTGGGAGGGAGAGCGGGGACCCTCAGCTGCCCCCTTTTCCTTCCTGCTGGGGTGCTGTCCCCTGTGACCCCAAGGACCCTTGCCCCAGGACACAGACCCCTTCACTCCGGGGTGCTATCCCCATCCTCTGCCTCATCGTTCCCCTGAGCACTGGGGGACAGACCCTCACCCCCACCCTGGGGGTGCGGCACCTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975_MULTIEX2-2/2=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PD(0.2=20.0)
A:
PF120043=DUF3498=PD(1.2=53.8)
C2:
PF120043=DUF3498=PD(2.8=34.7)
Main Inclusion Isoform:
ENSBTAT00000027936fB6887
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGAACCACCAAGGCTCCT
R:
CTCGCCGTTCTCAGTGATCTG
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development