BtaEX0035598 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006654 | TANK
Description
TRAF family member-associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:35247178-35252052:-
Coord C1 exon
chr2:35251481-35252052
Coord A exon
chr2:35250167-35250243
Coord C2 exon
chr2:35247178-35248046
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTGTTCTTTTACTAGTCT
3' ss Score
7.43
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
CAAAAGATGATATAAATAGAGGTGCACTGTGCATCACATCTGTCACACCAAGAGGACTGGGCCAAGATGAGGAAGACACATCTTTTGAATCACTTTCTAAACTCAATGTCAAGTTTCCACCTACAGACAATGACTCTACTTTCTTACATAGCACTCCAGAAAGACCCGATGTCCTTGGTTCTGTCACATCTGAGACTGTGTGCCAGGATCAATTTAATATGGAGCCCAGAGACAATCCAGGAAACTTTGTCAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAACCCTCAAATACTTGTATTAGGACATCTCTGGATAGAGCTCCGTGTTTGCCACCTGGAGACCATAATGCATTATTTGTAAATACATTCCCACTTCAGGACCCATCTGATGCACCTTTTCCTTCACTCGATTCCCCAGGAAAAGCTATCCGAGGACCACAGCAG
Seq A exon
TCTGTACAGTCATGTTTCAGTAGATGGCACCCTGCATTGTGCATTTGCTTTCTATGCTGCAGCAAGGGAAACAGCTG
Seq C2 exon
CCCATTTGGAAGCCCTTTCCTAATCAAGACAGTGACTTATCGGTACTAAGTGGCACAGGCTCCGAACTGCATATACCTCGCGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGATTTCCTCCGGCATCTTAATTCACACTTTAATGGGGAGACTTAAGATGCATTGAAAACAGACATGTCAAGTTCTACGTGATGATTTTGGGTTTGTAATATTATATATTAATACTTGATTGCAAACTTAGCTCAAGATCATTTACTGAAAAATCCAGTCACTGCTATTTGAATTTCTAAACAATATTGTAACTGTCTTTTATTGCCTTTTAAAAGATTGTTTTGTACAAAGCTGTAATTCATTGTATTCATGTTTACAGTGTTTATTATGGGATTATGCAATTGTGTAACAATAATTTATGTTTTTTCAAATGTCTAAGCTTATTGCTTGGGTTTCTAGTTAGAACTATTGAATGTGGTGATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006654_MULTIEX1-9/9=8-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.000 C2=0.203
Domain overlap (PFAM):
C1:
PF128452=TBD=PD(21.1=6.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000046172fB6927
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTGGAGACCATAATGC
R:
GAGCCTGTGCCACTTAGTACC
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development