HsaEX6016207 @ hg38
Exon Skipping
Gene
ENSG00000136560 | TANK
Description
TRAF family member associated NFKB activator [Source:HGNC Symbol;Acc:HGNC:11562]
Coordinates
chr2:161230971-161236187:+
Coord C1 exon
chr2:161230971-161231551
Coord A exon
chr2:161232733-161232809
Coord C2 exon
chr2:161235342-161236187
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTGTTCTTTTACTAGTCT
3' ss Score
7.09
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATATAAATAGAGGTGCACCATCCATCACATCTGTCACACCAAGAGGACTGTGCAGAGATGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTATGGACAATGACTCAACTTTCTTACATAGCACTCCAGAGAGACCCGGCATCCTTAGTCCTGCCACGTCTGAGGCAGTGTGCCAAGAGAAATTTAATATGGAGTTCAGAGACAACCCAGGGAACTTTGTTAAAACAGAAGAAACTTTATTTGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACAACTGACAAAACAAAGCCCTCAAATCTCGTAAACACTTGTATCAGGACAACTCTGGATAGAGCTGCGTGTTTGCCACCTGGAGACCATAATGCATTATATGTAAATAGCTTCCCACTTCTGGACCCATCTGATGCACCTTTTCCCTCACTCGATTCCCCGGGAAAAGCAATCCGAGGACCACAGCAG
Seq A exon
TCTGTGCATTCATGTTTCAGTAGATGGCACCCTGCATTGTACATTTGCTTTCTATACTACAGCAAGGGAAACAGCTG
Seq C2 exon
CCCATTTGGAAGCCCTTTCCTAATCAAGACAGTGACTCGGTGGTACTAAGTGGCACAGACTCAGAACTGCATATACCTCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGATTTCCTTCGGCATCTTAATTCACACTTCAATGGAGAGACTTAAGACACATTTGAAAACAGACATATCAAGTTCTATGTGATGATTTTGGGTTTTTAATACTATAAATACTTGATTGTAAACTAAATTCAAGATCATTTATAGGAAAATCTAGTTTCACAGCTATTTGAATTTTTTTCTGGATTTACTATATAACTCTTATTTTTTAAAAGATCATTCTGTTCTTTCAAGGAGAAATAAGCCTAAAAGAAGAAAAACAAAAAAAATTCTGTATAAAACTGTAATCCTTTGTATTCATGTTTACAGTGCTATTACTATAATTCAAAATTATGTATGTGACTTAGAGTTATATAATCATAATTTATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136560-'61-46,'61-43,62-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
PF128452=TBD=PD(21.1=75.0)
A:
NO
C2:
PF128452=TBD=PD(11.8=75.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTGGAGACCATAATGC
R:
TGTGCCACTTAGTACCACCGA
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains