BtaEX0037909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98923450-98924999:-
Coord C1 exon
chr11:98924938-98924999
Coord A exon
chr11:98924227-98924380
Coord C2 exon
chr11:98923450-98923531
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCACTGCATTCTCTCCGCAGTGC
3' ss Score
10.54
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
TGCTCGGCGTGGGACATGGACGCAGGCTCCTCACTGACATGTACAACGCTCACCTCACCAAG
Seq A exon
TGCTGAGAAGTGGATACCACCGTCTTGGCGTCAGGGAGCTTGCATCCCTGCTGAGCCGTGGGGTCTGGCTTCACGAGTGTGTGCAGAGATACCACATTAGGAGACCCAGGGTGTGCGTGGTTAAGAGCAGAGACTGGAGTCAAGTGGCTTCACT
Seq C2 exon
GACTACACCGTGCGTGGCCTCCTGGGCAAAGCCACAGATGACTTCTGTGAGGACGGGCGGCTGGTGGAGAAGACGACGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(11.4=100),PF0150913=TruB_N=FE(19.8=100)
A:
NO
C2:
PF0084917=PseudoU_synth_2=FE(15.3=100),PF0150913=TruB_N=FE(26.7=100)
Main Inclusion Isoform:
ENSBTAT00000064542fB7408
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGACGCAGGCTCCTC
R:
CGTACGTCGTCTTCTCCACCA
Band lengths:
132-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development