BtaINT0153695 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98923450-98924999:-
Coord C1 exon
chr11:98924938-98924999
Coord A exon
chr11:98923532-98924937
Coord C2 exon
chr11:98923450-98923531
Length
1406 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CTTGCCTCCCCATCCTCCAGGAC
3' ss Score
11.19
Exon sequences
Seq C1 exon
TGCTCGGCGTGGGACATGGACGCAGGCTCCTCACTGACATGTACAACGCTCACCTCACCAAG
Seq A exon
GTACGGGGGCTGGGGACCACCTGCTTATCCCTCCGCCCTTTCCCTGGGGGTCACTGGTAGGATTCTGAAGCAGAGAGGATTCCACAAGGGATACCCCGGACATCAGACGGCATTTTGGGGCAGGGCAAGTCTTGTGCTAGGGGAAGCTGTAACAACAGCATCATCGTGACAGCTGGCGTTGTCCCATGCTGACTGTTCTGTGCCTAGCCGTGTATGGACCCCGTCATGGATGCCTTACAGCATCCCTGTGAGATGGGATCTACTGTTAACCCATTTTACAGATGAAAGAATGAGGCCCCAAAGAGGAGATGACACTTGTTCTGGTTCACACAGCCTTTATTTCTTAAATTTTTTTGGCCACACCACTGGGCTTGCAGGATCTTAGTTCCTCAACCAGGGATTGAACCCTTGGCCCCAGCGGTGAAAGTGCAGAGTCCTACCCATTGGACTGCCAGGGAATTTCCTCACACGGCCTCTAAGGAGGCAGAGCTGGGATTTGAACCTGGGTCTGTCTGACCCCAGAGCCTGATCTTGATACCACTGCATTCTCTCCGCAGTGCTGAGAAGTGGATACCACCGTCTTGGCGTCAGGGAGCTTGCATCCCTGCTGAGCCGTGGGGTCTGGCTTCACGAGTGTGTGCAGAGATACCACATTAGGAGACCCAGGGTGTGCGTGGTTAAGAGCAGAGACTGGAGTCAAGTGGCTTCACTGTAAGACTCCAGCTTGTAGCACTGTTGGAGCCAGCTCCGTGTCCCGGGCTGGATTACTTAACATCTATGTGCGTCCATTTCCTCATCTTTGAAATGGGAGTGAAAACAGTACCTCCTCCACGGGCTTACTGTGAAGATTAAATCAGTGGCAGTGTGGAACGGGCTCAGACAGCCACTCGCACGTGGTGGGTGCTCAGTCGATGTCCCCGCTGTCACCCTCACTGTCGTTGTCGTTACTCTTACCTGAGGCAGAGGCAGGGAGCTACACAGATCGTATTTGGAGGGAAGAGAGAAGCCGACAGTTGCCCGGGAGGGGCCTGGGAGGCTCCAGCGTCAGGTTGGATGGAAGTGGAGAGGCATGGAGGCTGGGGGTGGTCACAGGGTGGCTCTGGGCGCCCTGTGCAGGCTGCCGATGCTGCTTGCTGTCACAGGAGAGTCTGGTGGAGAGGCATGGAGGCTGGGGGTGCTCACAGGGTGGCTCTGGGCGCCCTGTGCAGGCTGCCGATGCTGCTTGCTGTCACAGGAGAGTCTGGTGCCCTTGCCCAGGAGGCAGCTGGGCAGGGGCTGAGCGCCCGAGCTCCCCGAGTGCCCCCCACCCCCAGCCTCAGTCTAGTACCCTGGGGGCCTGAGCTGCTGGACCACACCTCCTTCCTCTGTGCAGGGCTTAGAACATGCCTTGCCTCCCCATCCTCCAG
Seq C2 exon
GACTACACCGTGCGTGGCCTCCTGGGCAAAGCCACAGATGACTTCTGTGAGGACGGGCGGCTGGTGGAGAAGACGACGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663:ENSBTAT00000064542:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(11.4=100),PF0150913=TruB_N=FE(19.8=100)
A:
NA
C2:
PF0084917=PseudoU_synth_2=FE(15.3=100),PF0150913=TruB_N=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development