MmuINT0166396 @ mm9
Intron Retention
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase homolog 2 (E. coli) [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29637640-29638893:-
Coord C1 exon
chr2:29638832-29638893
Coord A exon
chr2:29637722-29638831
Coord C2 exon
chr2:29637640-29637721
Length
1110 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCG
5' ss Score
8.7
3' ss Seq
CCCCTGCCTTGTCCCCACAGGAT
3' ss Score
13.66
Exon sequences
Seq C1 exon
TGCTCGCCGTGGGACATGGACGCAGCCTCCTCACTGACATGTATGATGCTCATCTCACCAAG
Seq A exon
GTATCGTGGGCTAAAGATATGGTGCAGCCTACTTACCCAGTGCTTCTTCCCAGAAGTCACGGATAGGGAAGGCCGAGGCCACTAGCAAGCATTTTTGGCTTGCTGTAGCTAGGAAAGACTAGAGATACAGCATTACCCCTCACACTCTTCTCTTCTGACCATCACGAAGAGCTGTGTGTGGGTCCCCTTAGGAAAGCCCTGTCCCACTTAGCCACGCTCCCATTTTACAGTTGAGTACGGTGAGGCTTAGGAAGAAAGAACATGCCTAGCCAGGGTCACGCTTTCTTTAAAGCCTTAGGAGCTGAAATTTGAGCTTGGATCTGTCCCACACCACAGTCCAAGCCGAGCAGTGTTTTGTTCTCATGGCAAGACAGATGTGTGTGTCACTGTCCAGTCTCCAGGACTCCTCCAGGGCCAGGTGGGGCCTTAGACTGTGGTCTTGTGAAGTCTGCTGAGGGGACACTTTAGGTAGCCGTGTCTTCAGTGCTGAACAGCACAGAATTCAGGACCAAAAGGTTCCAGTTTGCAATCCTAGTCAGGGCTGTGGTGAGACACTTGCCCATTATACCAGTCTGCCAGCCACAGCTCCCATGTCCTTGACAAGTCCATGAACATCTTATCTTTGTGCCTCAGTTTCCTCTAGTCTTCGATGGGAATGAAGAAATAGGTCAAAGTGACTTCATGTGAAGCCTTGGCTCAGCTCCTGGTACACAGTCCAGGCCAAATCAACGTCACGGCCACTGCTATCTCTCTCCTCCTTGCTATTATCACCCCAGGGAAGGGCTGGTTGTCTGTACAGAGTTGGAGGAAGAGGGGCTCATGAGGGCATCCAGAAATGCCCTTAATTTGGCCACTGAAACAGCCCCAGGACATGTGTGGGGTGACACTGTTTGGTTTGGCCAAGTGGGTGGAGACTGGTGCTGGTGCCATGCTTGGGTCACAGGGAAGAGCACAGGGCTGCCCTGAGCTCCAGAGTGGAGTGCACATCCTCCCTCAGGGCAGGGGAGCAGCAGGCATGCTGTATGGAGCTCTAGGAGGCCCCACCCAGCACCAGACCACTTCCTCAGCATCAGAGCTTAGAATGGGGACCCCCCTGCCTTGTCCCCACAG
Seq C2 exon
GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGACAACTTCTGTGAAGATGGACGGCTGATAGAGAAGACAACGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826-Trub2:NM_145520:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(13.2=100),PF0150913=TruB_N=FE(13.3=100)
A:
NA
C2:
PF0084917=PseudoU_synth_2=FE(17.8=100),PF0150913=TruB_N=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: