BtaEX0038076 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98416188-98421322:+
Coord C1 exon
chr11:98416188-98416329
Coord A exon
chr11:98419886-98420051
Coord C2 exon
chr11:98421180-98421322
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGGCCCACTGTGTCCTGCAGGCA
3' ss Score
7.65
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGACCTTTGCTGAGGCGGACTACCAGCAGGCGCTGGCACTGAGTCCGAAGGACGAGGGCGCCCACCTGCGCATGGGCCTGTTGCAGGAGAAGTTGGGCTTCTGCGAGCACCGGAGCAG
Seq A exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCAATGGCCATCCAGCACAATCCCCAGAAGCCCCAGTACTACCTGTACCGTGCCCGGAGCCGGCAGCTCATGCAGAACATTTTTGGGGCCCGCCAGGATGTTGCCACTGTCCTGCTCCTTGACCCCAAGCAACCCAAG
Seq C2 exon
CTGCTTCCGCTGATGGCCAACCTTTTTCCCGGCATGTCAGTAGAAGAGGTGCTAAGCAGCCAGGTGGCAAACCTGGCTAGGTTGCAGCTGGAGCGGGTGGTGGAGCACAGCATGTACACCAGGGCCCCTCAGGACATCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.104
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(22.4=31.2)
A:
PF134141=TPR_11=PD(76.1=91.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGACCTTTGCTGAGGC
R:
CTGGTGTACATGCTGTGCTCC
Band lengths:
245-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development