GgaEX0006835 @ galGal3
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5558005-5559092:-
Coord C1 exon
chr17:5558951-5559092
Coord A exon
chr17:5558713-5558878
Coord C2 exon
chr17:5558005-5558146
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACACTGCTGTCCCCTCGCAGGCG
3' ss Score
10.93
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACTGCTTCTTTTGCCTGGGGGAGCTGACCTATGCGCTGGCGGATTACCAGCAGGCGCTGGAGCTGAGTCCAGGGAACCGCGCTGTGCAGGAACGTGTTGCAGCTGTGTTGCATGAGAAGGGCTGTCAGGACTTGGCAGCCAG
Seq A exon
GCGGTTCCTGGAGGCAGAAGCTTGTTTTTCTATGGCCATTGAGCATGACCCCCGAGGAGCGCTGTACTACCTGTGTCGTGCCATGGCCAAGCGGTGCCTAGGGAAGGTGGAGAGCTCGAGGGAGGATGTCGCACTCGGTCTGCGGCTCAGCCCCACAGATAGCAAG
Seq C2 exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-'3-7,'3-6,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(23.5=33.3)
A:
PF134141=TPR_11=PD(75.0=91.1)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTTCTTTTGCCTGGGG
R:
TGGAAGTCTTGGAGGACTCTGA
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event