DreEX6014361 @ danRer10
Exon Skipping
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65280065-65281714:-
Coord C1 exon
chr5:65281573-65281714
Coord A exon
chr5:65281328-65281493
Coord C2 exon
chr5:65280065-65280201
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTGAATGTGATTTGTTGCAGGAA
3' ss Score
7.93
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ATAGTTTTTTTAAGCAGTGTGAATGGACCTTTGCTCTGGCTGACTATCAGCAAGCTGAGGAGTTGGACCTGGAAAACACAGCTATCTGGCTACGACTTGCTGTTATTCACAACACACTGGGTCTGCAGAGCTACGAAGACAA
Seq A exon
GAAGTTCCAGGAAGCAGCAGAAAGGTTTTCTGTTGCAATAAAGTACAACCCTGGTGTAGTTCAGTATTATGAGAATCGAGCCAAATCTTTTAACAAACTGGGCAAAACAGAGGAGGCCAAAAACGATGCCATCAGTGTTCTTGTCTTAGAGCCCACCAATGACCAG
Seq C2 exon
GTGGTGCCATTGCTGTTAAGTCTGCTCCCAGGATGCTCCTTGACTGATATCATGTCGTGTGCCACTGCACAATCTGTCAAAACCCTGCTCATGGAAAAGATTGAAATGTTCAACCTTGCAGTCTCCTGTATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(36.2=52.1),PF134141=TPR_11=PU(22.1=31.2)
A:
PF134141=TPR_11=PD(75.0=91.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGACCTTTGCTCTGGCTG
R:
AGGAGACTGCAAGGTTGAACA
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]