RnoEX0094607 @ rn6
Exon Skipping
Gene
ENSRNOG00000050650 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:RGD Symbol;Acc:2318922]
Coordinates
chr3:11803999-11805468:-
Coord C1 exon
chr3:11805327-11805468
Coord A exon
chr3:11804467-11804628
Coord C2 exon
chr3:11803999-11804141
Length
162 bp
Sequences
Splice sites
3' ss Seq
CGGGCATGTCCCTCAGGCAGTTC
3' ss Score
0.39
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTGCTTCTACCAGCTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCACTGGCTCTGAGCCCACTGGATGAAGGAGCGAACTTGCGCATGGGGGTGCTGCAGGAGAAGATGGGCTTCTGCCAGCAGAAGCACAG
Seq A exon
TTCCAGACAGCAGAGGAGCACTTCTCGGAGGCTATAAGGCACAACCCACAGAAGCCCCAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACATACTGGGGGCCCGCCAGGATGTTGCTACTGTGCTGCTCCTGAACCCCAACTATCCAAAG
Seq C2 exon
ATGGCTGCAATGATGAACACCCTTTTTCCTGGCATGACTGTGGAGGGCGCCCTTAAGAGCCGAGTGGCTGAACTGGCTAGGCTCCAGCTAACCCGGATGATAGAAAACGGGCCAAGGAGAAACTACCCTCAAAGCATTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050650-'12-13,'12-12,13-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.146
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
A:
PF134141=TPR_11=PD(78.5=91.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTCTACCAGCTGGGCA
R:
GCCCGTTTTCTATCATCCGGG
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]