DreEX6014358 @ danRer10
Exon Skipping
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65289591-65290844:-
Coord C1 exon
chr5:65290681-65290844
Coord A exon
chr5:65289774-65289841
Coord C2 exon
chr5:65289591-65289681
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTAGAAATATGTTTTTCAGACC
3' ss Score
4.88
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTTACCAAATGTTTTCTAGTCAAAAGTATTTTTATTGGCGGCACTTTTTTGTCACGGGAGGACTTTTCTTTTTTAAAGTTATCTGTCTTTTACCTTTATATTCTCTCTAAGTGATTTAAATAACCTTTAAGCCAATATGAATCCAACTGTCGACTGTTCCGAG
Seq A exon
ACCCCAGTACTAAAAAAGAAACCTGAATTGGATGGGGAGCTCATTATAAAAGAAAAGGCTGAAAAGCA
Seq C2 exon
TTATGAAACAGGTATTATTTCCATGGCACATTCTCAGTTTGATAAGGCCGTGTCCTGTTTCTCAAAGGCCATAGTGCTCCAGCCACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(7.4=21.7)
C2:
PF134141=TPR_11=FE(44.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACGGGAGGACTTTTCTT
R:
TTTGAGAAACAGGACACGGCC
Band lengths:
180-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]