HsaEX1042279 @ hg38
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr9:127724756-127727112:+
Coord C1 exon
chr9:127724756-127724897
Coord A exon
chr9:127726239-127726404
Coord C2 exon
chr9:127726970-127727112
Length
166 bp
Sequences
Splice sites
3' ss Seq
GGACCCACTGTGTCGTGCAGGCA
3' ss Score
3.8
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCGCTGAGCCCTCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGGAGAAGATGGGCTTCTGCGAGCAGAGGCGCAA
Seq A exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
Seq C2 exon
CTGTCCCTGCTGATGACCAACCTCTTCCCGGGCATGTCGGTGGAGGAGGTGCTTAGCACCCAGATAGCCCACCTGGCCAGGCTGCAGCTGGAGCAGATGGTGGAGGGCAGCCTGCAGGCCGGCAGCCCACAAGGCATTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-'12-17,'12-16,14-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.188
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
A:
PF134141=TPR_11=PD(78.5=91.1)
C2:
NO
Main Skipping Isoform:
ENST00000373289fB28984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTTCTTCCAGCTGGGC
R:
CTCCACCATCTGCTCCAGCT
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains