GgaEX0006834 @ galGal3
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5558713-5559824:-
Coord C1 exon
chr17:5559583-5559824
Coord A exon
chr17:5558951-5559092
Coord C2 exon
chr17:5558713-5558878
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATAGTCCTGCTTCTCTGCAGACT
3' ss Score
7.93
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
Seq A exon
ACTGCTTCTTTTGCCTGGGGGAGCTGACCTATGCGCTGGCGGATTACCAGCAGGCGCTGGAGCTGAGTCCAGGGAACCGCGCTGTGCAGGAACGTGTTGCAGCTGTGTTGCATGAGAAGGGCTGTCAGGACTTGGCAGCCAG
Seq C2 exon
GCGGTTCCTGGAGGCAGAAGCTTGTTTTTCTATGGCCATTGAGCATGACCCCCGAGGAGCGCTGTACTACCTGTGTCGTGCCATGGCCAAGCGGTGCCTAGGGAAGGTGGAGAGCTCGAGGGAGGATGTCGCACTCGGTCTGCGGCTCAGCCCCACAGATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-'2-6,'2-5,3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134291=TPR_15=PD(0.1=0.0),PF134241=TPR_12=PD(86.6=86.6)
A:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(23.5=33.3)
C2:
PF134141=TPR_11=PD(75.0=91.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGACTTCAGTGCAGCC
R:
AAACAAGCTTCTGCCTCCAGG
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event