MmuEX6100617 @ mm9
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32623457-32624862:-
Coord C1 exon
chr2:32624618-32624862
Coord A exon
chr2:32624362-32624503
Coord C2 exon
chr2:32623457-32623622
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTTCACCCTCGGCTCCTAGATT
3' ss Score
7.37
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGGCACCTTGCGTAGACGGCTCCAGCAATTTGACCATGCTGTGGAAGACTTCCTGAAGGCAATGGACATGGTGACTGACACCCAGGACAACCTAGTGAAGCAGGCGCAGCGTCAGCTGCTGCTGACTTACAATGACTTTGCTGTGCACTGCTACAACCATGGTGCCTATCAGGAGGGCGTGCTGCTGCTGAACAAGGCTATCAGAGACGAGCAGAATGAGAAGGGCTTGTACATCAACCGTGGGG
Seq A exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCGCTGGCCCTGAGCCCGCTGGATGAAGGAGCCAACTTGCGCATGGGTGTGCTGCAGGAGAAGCTGGGCTTCTGCCAGCAGAAACACAG
Seq C2 exon
GCAGTTCCAGACAGCAGAGGAGCACTTCTCGGAGGCCATAAGGCACAGCCCTCAGAAACCACAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCTGCAGAACACTCTGGGGGCCCGCCTGGATGTCGCTACTGTACTGCTTCTCAATCCCGAGTATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
A:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGCAATTTGACCATGC
R:
AGAAGTGCTCCTCTGCTGTCT
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: