HsaEX0067783 @ hg19
Exon Skipping
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130486399-130488683:+
Coord C1 exon
chr9:130486399-130486643
Coord A exon
chr9:130487035-130487176
Coord C2 exon
chr9:130488518-130488683
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCCTCCGGACCCTAGATT
3' ss Score
7.4
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
Exon sequences
Seq C1 exon
GGGCACCATGTACCGACGGCTCCAGGAGTTCGATGGGGCAGTGGAGGACTTCCTGAAGGTGCTGGACATGGTGACCGAGGACCAGGAGGACATGGTGCGGCAGGCACAGCGCCAGCTGTTGCTGACCTACAACGACTTTGCCGTGCACTGCTACAGGCAGGGCGCCTACCAGGAGGGCGTGCTGCTGCTGAACAAGGCCCTCCGGGACGAGCAGCAGGAGAAAGGACTCTACATCAACCGAGGCG
Seq A exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCGCTGAGCCCTCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGGAGAAGATGGGCTTCTGCGAGCAGAGGCGCAA
Seq C2 exon
GCAGTTCCAGAAGGCAGAGAACCACTTCTCCACGGCCATCCGGCACAACCCCCAGAAGGCCCAGTACTACCTGTACCGGGCCAAGAGCCGGCAGCTGCTGCAGAACATTTTTGGGGCCCGCCAGGATGTGGCCACTGTCCTGCTCCTCAACCCCAAGCAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.272
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
A:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
C2:
PF134141=TPR_11=PD(78.5=91.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTGCTGACCTACAACGA
R:
GCCCCAAAAATGTTCTGCAGC
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)