HsaINT0174083 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130486399-130487176:+
Coord C1 exon
chr9:130486399-130486643
Coord A exon
chr9:130486644-130487034
Coord C2 exon
chr9:130487035-130487176
Length
391 bp
Sequences
Splice sites
5' ss Seq
GCGGTGCGC
5' ss Score
6.63
3' ss Seq
CCCCCGCCTCCGGACCCTAGATT
3' ss Score
7.4
Exon sequences
Seq C1 exon
GGGCACCATGTACCGACGGCTCCAGGAGTTCGATGGGGCAGTGGAGGACTTCCTGAAGGTGCTGGACATGGTGACCGAGGACCAGGAGGACATGGTGCGGCAGGCACAGCGCCAGCTGTTGCTGACCTACAACGACTTTGCCGTGCACTGCTACAGGCAGGGCGCCTACCAGGAGGGCGTGCTGCTGCTGAACAAGGCCCTCCGGGACGAGCAGCAGGAGAAAGGACTCTACATCAACCGAGGCG
Seq A exon
GTGCGCAGCGACCAGGGCACTGGGGAGGGGGGGTGCGGGGGAGCCTCGCCATCTCTAAGGCCCCCACTGGGCACTTGAGGCCCCTGGGGGGAAGGAGGAAGGGAGAGAGGAAGGAAGCAAGGGAAGAGGAAATGTAATAGTCTCAGTATCCCAGGAACACACTTTGGGAAATGTTGCCTTAGACAAACTGGCTCCAGACTCCTTAAAATGCTCAAAACAGGCAGCTGGGGAACAGTGCCCAGACGCCCAGAAAACTAGAGAGGACGGAGACTGCGGCGGGGGGTTATCAGCCACCAGTTTCAGGCCCTGGCCCCCGGGCTGGAGCCGGCTGGGCTGGGGCTCCCGGGCACTGGGAGTTGGGGGTCCACTCACCCCCGCCTCCGGACCCTAG
Seq C2 exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTTGCCGAGGCGGACTACCAGCAGGCGCTGGCGCTGAGCCCTCAGGACGAGGGCGCCAACACGCGCATGGGCCTGCTGCAGGAGAAGATGGGCTTCTGCGAGCAGAGGCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
A:
NA
C2:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTCCAGGAGTTCGAT
R:
GAAGCCCATCTTCTCCTGCAG
Band lengths:
356-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)