DreINT0021842 @ danRer10
Intron Retention
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65281573-65283189:-
Coord C1 exon
chr5:65282912-65283189
Coord A exon
chr5:65281715-65282911
Coord C2 exon
chr5:65281573-65281714
Length
1197 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TTATTATTTTTTCCTCTCAGATA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GGGAATTCTGTATCGGCGCCTAAAAGACTTCACTGCTGCCATTGAGGACTTGGTTCTTGCTGTTGAGTTTTGTGGGATTGAAGAAGAATCTCCTCAGGGAAAGCCCCAAGATGACTCTGATGGTTTAGAGGAAGAAGCACAGACCCAAATGGTGCTCACGTACAATGATTTTGCCATTCAGTGCTTCTCCCAGGGTCTGTACAGTGAAGCTGTCATACTGCTGAACAAGGCCATAGAGAAACAAAGAGATGCAAGTGAACTGTTCATCAACAGAGGAG
Seq A exon
GTATGGAAGATAAGAGAAAAAAAAGTTTCATGCGGTTTGGGCTGAGAGTGACAGAAATAATCAGTTTTTTTTTATTACAAAAGGCTTCAGTCATTAAACCTAATAAGTTCAGATTTCTCAAAATATTTATGGAAACATTCATTCATTTATTTATTCATTCATTTTTCTTCGACTTATAGTCCCTTTATTCATCAGGGGTCGCCACAGCGGAATGAACCACCAACTTATCCAGCATAGGTTTTATACAGCGGATGCCTTTCCAGCTGCAACCCAGTTTTGGGAAACATCATCTACACATACACTATGGCCAATTTAGTTTATATGTATATGAGGGCGAAGCAGTGGCACAGTAGGTAGTGCTGTCACCTCACAGCAAGAAGGTCGCTGGTTCGAGCCTTGGCTCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCTTTTGCGTAGGTTTCCTCCAGGTGCTCCGTTTTCCCCCACAGTTTCCCAGAGATGGATTGCGGCTGGAAGGGCATGGGCTGCATAAAAACTTGCTGCATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGTATATACAGTTGACGTCAGAATTATTAGCCCCCCTATACATTTTTTTTTATTTTTTAAATATTTCCTAAATAATGTTTATCAGATTCAGGAAATTTTCACAGTATGTCTGAAAATATTTTTTCTTCTGGAGAAAGTCTTATTTTGTTTTGATTTTGGCTAGAATAAAAGTAGTTTAACTTTTTTAAACAACATTTTAAGGACGAAATTATTAGCCCCTTTAAGTTTAATTTTCTTTGAATAGTCTACAGAACAAAGCATCATTATACGATGACTTGCCTAATTACCCTATCCTGCCTAGTTAACCTAGTTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGATGTATAGAAGTGTCTTTATCTAGTAAAATATCTAGTAATATATTATTTACCGTCATTATGGCAAAGATAAAATAAATGAGTTATTAGAAATGAGTTATTAAAACTATTATGATTTAAAATGTGTTGAAAAAATCTTCTCTCCGTTAAACAGAAGTTGGGGAAAAAAATAAACGGGGCCAATAATTCACGGGGGTTAATATACATATAGTATATATATAATTATTATTTTTTCCTCTCAG
Seq C2 exon
ATAGTTTTTTTAAGCAGTGTGAATGGACCTTTGCTCTGGCTGACTATCAGCAAGCTGAGGAGTTGGACCTGGAAAACACAGCTATCTGGCTACGACTTGCTGTTATTCACAACACACTGGGTCTGCAGAGCTACGAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035:ENSDART00000170677:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.3=25.5),PF134141=TPR_11=PU(63.8=46.8)
A:
NA
C2:
PF134141=TPR_11=PD(36.2=52.1),PF134141=TPR_11=PU(22.1=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGCCTAAAAGACTTCACT
R:
AGCTGTGTTTTCCAGGTCCAA
Band lengths:
348-1545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]