GgaINT0123989 @ galGal4
Intron Retention
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4929541-4930414:-
Coord C1 exon
chr17:4930173-4930414
Coord A exon
chr17:4929683-4930172
Coord C2 exon
chr17:4929541-4929682
Length
490 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
ATAGTCCTGCTTCTCTGCAGACT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
Seq A exon
GCAAGTGGCTGGGCTGGTGGTCACAGCAGGGTAATGTCAGTGGCTTGGGGATAATGCTGGGGTGTCACACAGCAGAGGCTGGCACTCAGGCAGCAAATCTCTTCAGAGAGAGGCCTTGCTCTGCAGCCCTGTGCTAGGGACCTGTGGCAGAAGCAGGTGGTGGGGTAGCTGGGTTCTCCCTTGATCCTGGTCCCAGTGCACTCTGAGGATACATTCAGTTTCAGCAGTGGGAAGGGGATGAGGAGTGGGGATTTGCCACTGGTGCTACTACTCCTTCTCCATGTAGTCTGTTCTGGGGCACAGCTGGCAACTGCTGCTCTCCCCCACATCAGGCTGCATCTGCTGGTTGTTGCAGTGCAGAGCTTTTGGCTAGTGATGCTGAAACCTGGGGTGGACTGGACATGAGGTGTGATTCCCACTGGCTCTAGACAAAGCCCTGGGGCAACAGCCATCCCCTCTCAGTTGCTGAGATAGTCCTGCTTCTCTGCAG
Seq C2 exon
ACTGCTTCTTTTGCCTGGGGGAGCTGACCTATGCGCTGGCGGATTACCAGCAGGCGCTGGAGCTGAGTCCAGGGAACCGCGCTGTGCAGGAACGTGTTGCAGCTGTGTTGCATGAGAAGGGCTGTCAGGACTTGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992:ENSGALT00000007997:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134291=TPR_15=PD(4.5=7.4),PF134241=TPR_12=PD(86.6=87.7)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGACTTCAGTGCAGCC
R:
CCCTTCTCATGCAACACAGCT
Band lengths:
344-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]