GgaEX1060915 @ galGal4
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4928595-4931599:-
Coord C1 exon
chr17:4931509-4931599
Coord A exon
chr17:4931189-4931335
Coord C2 exon
chr17:4928595-4928736
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGAGGGTGTCCATGGTGCAGGCA
3' ss Score
3.22
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGGCAGAAAGGACAGGACTTCTCCTCTTGTGGCCAGTGGGAGGAAGCCGTCATCTGCTACACAAAAGCCATCAGCCTGGATCCACAGCGG
Seq A exon
GCAGAGCTGTATGAGCAGCGGGCAGAGGCCTTCCTCCAGCTTTGTGACTTCCAGTCGGCCAAACTGAACTTAATGAAGGTGCTTATGTTGGCACCTGCGCGGAAGCAGCACTGCCTGGCTCGTCTGGCTCTTGTCCTTGACCTGCAG
Seq C2 exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992_MULTIEX1-1/9=C1-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(51.7=100)
A:
PF134141=TPR_11=PD(47.7=63.3),PF134141=TPR_11=PU(15.7=16.3)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAAAGGACAGGACTTC
R:
CTGCTTCTGTCCATCAGGCAT
Band lengths:
229-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]