GgaINT1028747 @ galGal4
Intron Retention
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4931189-4931599:-
Coord C1 exon
chr17:4931509-4931599
Coord A exon
chr17:4931336-4931508
Coord C2 exon
chr17:4931189-4931335
Length
173 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATG
5' ss Score
6.86
3' ss Seq
TGAGGGTGTCCATGGTGCAGGCA
3' ss Score
3.22
Exon sequences
Seq C1 exon
CTGGCAGAAAGGACAGGACTTCTCCTCTTGTGGCCAGTGGGAGGAAGCCGTCATCTGCTACACAAAAGCCATCAGCCTGGATCCACAGCGG
Seq A exon
GTAATGGGACCCTGGAGAGGTGGGAACAGGAGGCAGCATTGCTAAGCCTGTAGCACTGGCATCTGGCTTCAGAGTGTTTTTTGCTATGGTGTTAGCATGGTGCCAGCATGATTTTGGGCAGCTGGAGCATGGCTGGACCCTGGCAGCATGGGCTGAGGGTGTCCATGGTGCAG
Seq C2 exon
GCAGAGCTGTATGAGCAGCGGGCAGAGGCCTTCCTCCAGCTTTGTGACTTCCAGTCGGCCAAACTGAACTTAATGAAGGTGCTTATGTTGGCACCTGCGCGGAAGCAGCACTGCCTGGCTCGTCTGGCTCTTGTCCTTGACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992:ENSGALT00000007997:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(51.7=100)
A:
NA
C2:
PF134141=TPR_11=PD(47.7=63.3),PF134141=TPR_11=PU(15.7=16.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAAAGGACAGGACTTC
R:
CTGCAGGTCAAGGACAAGAGC
Band lengths:
237-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]