GgaEX1060916 @ galGal4
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4928595-4931599:-
Coord C1 exon
chr17:4931509-4931599
Coord A exon
chr17:4931018-4931118
Coord C2 exon
chr17:4928595-4928736
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGACTGGCTATCCCTGCAGGGC
3' ss Score
9.41
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CTGGCAGAAAGGACAGGACTTCTCCTCTTGTGGCCAGTGGGAGGAAGCCGTCATCTGCTACACAAAAGCCATCAGCCTGGATCCACAGCGG
Seq A exon
GGCCAGTGTCTGCTGGACCAGGAGCTCTACAGTGAGGCCCTGGAGGCCTTCACACATGCCGCTGAGCTGCAGCCTCACTGCAGGGTGTTCCACCAGAGGAG
Seq C2 exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992_MULTIEX1-2/9=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(51.7=100)
A:
PF134141=TPR_11=PD(41.4=70.6),PF134291=TPR_15=PU(8.3=32.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAAAGGACAGGACTTC
R:
CTGCTTCTGTCCATCAGGCAT
Band lengths:
229-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]