GgaINT0123990 @ galGal4
Intron Retention
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4929332-4929682:-
Coord C1 exon
chr17:4929541-4929682
Coord A exon
chr17:4929469-4929540
Coord C2 exon
chr17:4929332-4929468
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACACTGCTGTCCCCTCGCAGGCG
3' ss Score
10.93
Exon sequences
Seq C1 exon
ACTGCTTCTTTTGCCTGGGGGAGCTGACCTATGCGCTGGCGGATTACCAGCAGGCGCTGGAGCTGAGTCCAGGGAACCGCGCTGTGCAGGAACGTGTTGCAGCTGTGTTGCATGAGAAGGGCTGTCAGGACTTGGCAGCCAG
Seq A exon
GTGAGGAGCAGGGCGGTGTAGGCTGCCTGAGGGCCTGTGGTGAGCCAGGCACACACTGCTGTCCCCTCGCAG
Seq C2 exon
GCGGTTCCTGGAGGCAGAAGCTTGTTTTTCTATGGCCATTGAGCATGACCCCCGAGGAGCGCTGTACTACCTGTGTCGTGCCATGGCCAAGCGGTGCCTAGGGAAGGTGGAGAGCTCGAGGGAGGATGTCGCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992:ENSGALT00000007997:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGTTGCAGCTGTGTTG
R:
CGAGCTCTCCACCTTCCCTAG
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]