GgaEX1060919 @ galGal4
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4928595-4931599:-
Coord C1 exon
chr17:4931509-4931599
Coord A exon
chr17:4930173-4930414
Coord C2 exon
chr17:4928595-4928736
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCCCTGTGTCACAGGGG
3' ss Score
9.56
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
CTGGCAGAAAGGACAGGACTTCTCCTCTTGTGGCCAGTGGGAGGAAGCCGTCATCTGCTACACAAAAGCCATCAGCCTGGATCCACAGCGG
Seq A exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
Seq C2 exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992_MULTIEX1-5/9=C1-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=NA
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(51.7=100)
A:
PF134291=TPR_15=PD(4.5=7.4),PF134241=TPR_12=PD(86.6=87.7)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAAAGGACAGGACTTC
R:
CTGCTTCTGTCCATCAGGCAT
Band lengths:
229-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]