GgaEX1060921 @ galGal4
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4923895-4931599:-
Coord C1 exon
chr17:4931509-4931599
Coord A exon
chr17:4928595-4928736
Coord C2 exon
chr17:4923895-4927498
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTATTGCCACTGCAGATC
3' ss Score
7.78
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTGGCAGAAAGGACAGGACTTCTCCTCTTGTGGCCAGTGGGAGGAAGCCGTCATCTGCTACACAAAAGCCATCAGCCTGGATCCACAGCGG
Seq A exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
Seq C2 exon
GTCCCCACATAAGTGGCACTTCTGTGAAGCTGAGTAGAGCTGGTTCAGCCAGTGCCTGCAAGATCTGACCAGCAGAAGGATGTCAAAGAAGCTCAAGAGCTCATAGCACCAATTCCTCAGCCTGCTGTAGAAATTACCACTGAATAAAAATGTTTTTAAAAACCATTAGTAGCACCATGGTCTCCCTGGAGGTAGGACTGAACTTTTTCTTGTAGGTAAGTCCTGTTTTGTTCATTGCTGTGGTTTGCTGCAGAGAAATCCTTTGGACCTTGGGGGAAAGATGGGCAGAAGAAGTAGGGAGAGCTGAGTTCTTGGCAGGCTGAGCATTGCCATTTCCCTTATGTCCCTGTTGTTGGTGGTGCTCCCTACCAGCACCTATTCACAGTGAAAGGAAACTGGAAAGAAGTTGGCTCTAAAGATTTCCTTGCAACGAAAACTTGACAGTAATGTTGAGGGTGTTCACCAGCCAGTGATGCAGCAGTCAGCACCAGCACTGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992_MULTIEX1-9/9=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(51.7=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCGTCATCTGCTACAC
R:
AGTTCAGTCCTACCTCCAGGG
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]