GgaEX1060921 @ galGal3
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5556742-5558878:-
Coord C1 exon
chr17:5558713-5558878
Coord A exon
chr17:5558005-5558146
Coord C2 exon
chr17:5556742-5556908
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTATTGCCACTGCAGATC
3' ss Score
7.78
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GCGGTTCCTGGAGGCAGAAGCTTGTTTTTCTATGGCCATTGAGCATGACCCCCGAGGAGCGCTGTACTACCTGTGTCGTGCCATGGCCAAGCGGTGCCTAGGGAAGGTGGAGAGCTCGAGGGAGGATGTCGCACTCGGTCTGCGGCTCAGCCCCACAGATAGCAAG
Seq A exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
Seq C2 exon
GTCCCCACATAAGTGGCACTTCTGTGAAGCTGAGTAGAGCTGGTTCAGCCAGTGCCTGCAAGATCTGACCAGCAGAAGGATGTCAAAGAAGCTCAAGAGCTCATAGCACCAATTCCTCAGCCTGCTGTAGAAATTACCACTGAATAAAAATGTTTTTAAAAACCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-'4-8,'4-7,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=NA
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(75.0=91.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCGCTGTACTACCTGT
R:
TACAGCAGGCTGAGGAATTGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]