GgaINT1028751 @ galGal4
Intron Retention
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4930173-4930702:-
Coord C1 exon
chr17:4930488-4930702
Coord A exon
chr17:4930415-4930487
Coord C2 exon
chr17:4930173-4930414
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TCTCTGTCCCTGTGTCACAGGGG
3' ss Score
9.56
Exon sequences
Seq C1 exon
CTGGCCCTGTGCCTCCAGGACATCCAACAGGCCCTGAAGCTGGAACCTCAGCACAGAGCTGCCCAGGTTTTGTGGCACAGGCTGGTGAGACAAGGCCAGGAGGCCAAAGCCCAGGCAGTGTTGAAGGCCTTGCGTGGAGACCTGCGTGGGGCCCTGTACGAGATCAGCTTTGCTATTGAAAGTGACCCGTTGGCTGCTGAATTCTTCACCCTCAG
Seq A exon
GTAGTGATCGTGTTGCTGCGGGTGGTTAGCTGTGCTGCTGCCTGAGTTTCCTTTCTCTGTCCCTGTGTCACAG
Seq C2 exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992:ENSGALT00000007997:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF134291=TPR_15=FE(53.4=100),PF134241=TPR_12=PU(12.2=13.9)
A:
NA
C2:
PF134291=TPR_15=PD(4.5=7.4),PF134241=TPR_12=PD(86.6=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGCTGAATTCTTCACCC
R:
GCGCACAGCACAATCATTGTA
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]