BtaINT0154242 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013509 | TTC16
Description
Bos taurus tetratricopeptide repeat domain 16 (TTC16), mRNA. [Source:RefSeq mRNA;Acc:NM_001102138]
Coordinates
chr11:98414695-98415812:+
Coord C1 exon
chr11:98414695-98414909
Coord A exon
chr11:98414910-98415567
Coord C2 exon
chr11:98415568-98415812
Length
658 bp
Sequences
Splice sites
5' ss Seq
CCGGTATTG
5' ss Score
4.48
3' ss Seq
CTCATATGCCTCTCCCGTAGGGG
3' ss Score
9.04
Exon sequences
Seq C1 exon
CCCAACCTCTGCTATCGAGACCTACACAGTGCCTTGCTATTGGATCCCAAGCACCCACAGGCCAAGGTGCTGCTCCAGGTGATGGTGGGCCAGGCCGAGCAGGCACGCCAAGATGCCGGGGTCCTGGCCGTGCAGGGCAAGTTGCAACATGCGCTGCAGTGCATCAACTGTGCCATTGAGAACAACCCTCTGGACCCCAGCTTCTTCCTCTTCCG
Seq A exon
GTATTGGGTGGGGAAATGCTGTCTTGGGTCCCAGGCTCTGCCTTGCCTCAGATGTGCTGTGTGATCTCAGGAGAGCCCATGACCCTCCCCAGGTCTCAGTCTCCCCATCTAGTCTCTAAGGGTCTTTCCCTGCTCGCCATCAAGACCGAGGGATCATGGGAGGTGGTTTCTGCTACTGCTTCTGGAGAAGGGGCAGGCAGCAGCCTGTTAACCTGGGAATCCTGGACCCCCAGGACTGCTGAGCAGTTTATACTGGGAGGCTCAGCCCAACTCAGCCCAGGAGAGGAGGCTTAGGTTTGAATTTGCGCCCCCTACCTCCCCAGCAAGGGCTCAACACCTCATTCTGGGCCATTTAACTTCCCTGACCCTGGGTTTTCTCAAGAAACAGTGGAGGTAAAACATCCTGTGTACAAAAAGCCTTAGCAGAGTGGCTGGCAGGCACATTGCTCCCAAAAAAAGAGAGAAGTTATTTGTAAAGGAAAGTAGAATCACCAGGCTAGCTCAGTAGCAATCGGGGAGCCGCACAGGCCAAATCTAATGCATGAGCGCGGAGGCCCCCCTGCCACCTCCAGAGGTCAGAGGACCCAGAGCTGCATCCACTCTCTGGGACACTCCGAGTCGGTGGGGGTGCTCTGGCTCTCATATGCCTCTCCCGTAG
Seq C2 exon
GGGCACCATGTACCGACGGCTCCAGGATTTTGACTTGGCAGTGGAGGACTTCCTGAAGGCGCTGGACATGATGAGCGACCACCAAGAGGAGCTGGTACAGCAGGCCCAGCGCCAACTGCTGCTGGCCTACAACGATTTCGCGGTGCACTGCTACATGCAGGGAGCCTACCAGGAGAGCGTGCTGCTGCTCAACAAGGCGCTCAAGGACGAGCAGCAGGAGAAAGGCCTCTACATCAACCGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013509:ENSBTAT00000043180:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=58.3)
A:
NA
C2:
PF134141=TPR_11=PD(36.8=30.1),PF134141=TPR_11=PU(64.7=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAGACCTACACAGTGCCT
R:
CGAAATCGTTGTAGGCCAGCA
Band lengths:
342-1000
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development