DreINT0021841 @ danRer10
Intron Retention
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65282912-65285937:-
Coord C1 exon
chr5:65285723-65285937
Coord A exon
chr5:65283190-65285722
Coord C2 exon
chr5:65282912-65283189
Length
2533 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TATTTTCTGCCTGCTATTAGGGG
3' ss Score
7.22
Exon sequences
Seq C1 exon
ATGACCCTGTGCTGTCATGACTTGAAGTCGGCACTCAGCATGAAACCGTGCTGTCCAGAGGCGCTTGCACTATTAGGGAGACTAAAGGAAGCAGCGGAAGAGTCCCATCAGGCAGCTGTTGATAAGGCATTAAAGGGAGAGCTTTCAGAGGCACTGGGCAAAATAAACAGTGCTATGGAGTTCATCCCAAATAAAGCACAGTACTACCTATTCAG
Seq A exon
GTAAAGCTCAGTGTTTTCACAGCCTGCTGAAGAATTTGCTTATCTGTATATTAAGAAATATATTCATGCTAAACAGCTAAAGTAGGGGCTATGAATTTGCTTTATTATAGGCTTCTTAGTACTGATTCTTTTTAAGCTTTGTTGTATTCTGAGACTCAAGCTACAAACACAAAAATCCGGTCAGGGGTAAAGCCAAAATTAGCTGGCTAGCCAGTTAAGCTTCAGTTAAGTTTGCACCAATACTGGGTTTTAGGTACCCTGAAGGTAGTGTAGCTGCTCCTTAATACCATGGCAACAAAGAGTGATTAAAGTCGAGCTGCCTTCATGCTACCTAAAACCCAAGATTGGGGCAAAGCAAAGTGAAACTTAACTAGCTAGTCAGTTAATCCAGTTTCATGATACATGATTTAGGGTGTTTAGCAGGCCTATGCTAAATCTTTTCTAACTAATCAGATATTACAAATTAACAATCAAAGTAACAATCAATGGAAGAAAAGGTTTAATTTATGAAAAGCAAGCATTAGCAACATGCTATTTCATGCTAATGAAATTCAATGTTAGCCATTTCAGAAACACGCTGACAATATGCTAAATACATATTAGAAGCATGTTATCAATGTGCTCAATCAAACTTATGAAAAACTTATGAAAAATTGCTGATTTGTGAAGCGTTAGCAACGTTATTTCCTGCTAATGAAATTTCATGTTAGACATTTTAAAAACATGCTGGAAACATGCTAAATGCATATTATGAACATGTTATCAATGTGCTGCTTCATGATAAAAACAATACAATTTCTGAAAAATTGCTAATTTGTAAATCGTTGGCAACGTTATTTCATGCTAAGGAAATGTCACGTTAGCCCTTTTAGAAACATGCTGGAAACATGCTAAATACATATTAGGAACTTGTTATGAATGTGTTTCTTCATGCTAAAAACTTTAAAACTTACAAAAATTGCTTATTCATTCGAGAATTAGCAACATGTTATTTCATGCTAATAAAAATTCATGTTAGCCATTTTAAAAACATGCTGGAAAGATGCTAAATTCATATTAGAAACATGTTATCAATGTGCTACTTTATGCCAAAAACAATCAAACTTATAAAAAATTGCTAATTTGTGAAGCGTTGGCAACAATATTTCATGGTAATGAAATGTCACGTTAGCTCTTTTAGAAAAATGCTGGAAACATGCTAAATACATATTAAAAACATGTTATCAATGTGTTGCTTCATGCTAAAAACATTCAAATTTATAAAAATTGCTAATTTGTTCGAGCATTAGCAACATGTTATTTCACCTGGAGGACATGCAAAATCCACACAGAAATGCTTACTGGTCGAGCCGGGACTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGTGCTAACCACTGAGCCACCGAGCCACCCCCTAATTTAATTTAATTTAATTTAATTAATGCAACCTAAAAATTATGAAGAAGACATAAAAGTATATAAATGGTAGTAAACTATGCATATTTTCTGCCTGCTATTAGGGGAATTCTGTATCGGCGCCTAAAAGACTTCACTGCTGCCATTGAGGACTTGGTTCTTGCTGTTGAGTTTTGTGGGATTGAAGAAGAATCTCCTCAGGGAAAGCCCCAAGATGACTCTGATGGTTTAGAGGAAGAAGCACAGACCCAAATGGTGCTCACGTACAATGATTTTGCCATTCAGTGCTTCTCCCAGGGTCTGTACAGTGAAGCTGTCATACTGCTGAACAAGGCCATAGAGAAACAAAGAGATGCAAGTGAACTGTTCATCAACAGAGGAGGTATGGAAGATAAGAGAAAAAAAAGTTTCATGGCAACGTTATTTCATGCTAAGGAAATGTCACGTTAGCCCTTTTAGAAACATGCTGGAAACATGCTAAATACATATTAGGAACTTGTTATGAATGTGTTTCTTCATGCTAAAAACTTTAAAACTTACAAAAATTGCTTATTCATTCGAGAATTAGCAACATGTTATTTCATGCTAATAAAAATTCATGTTAGCCATTTTAAAAACATGCTGGAAAGATGCTAAATTCATATTAGAAACATGTTATCAATGTGCTACTTTATGCCAAAAACAATCAAACTTATAAAAAATTGCTAATTTGTGAAGCGTTGGCAACAATATTTCATGGTAATGAAATGTCACGTTAGCTCTTTTAGAAAAATGCTGGAAACATGCTAAATACATATTAAAAACATGTTATCAATGTGTTGCTTCATGCTAAAAACATTCAAATTTATAAAAATTGCTAATTTGTTCGAGCATTAGCAACATGTTATTTCACCTGGAGGACATGCAAAATCCACACAGAAATGCTTACTGGTCGAGCCGGGACTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGTGCTAACCACTGAGCCACCGAGCCACCCCCTAATTTAATTTAATTTAATTTAATTAATGCAACCTAAAAATTATGAAGAAGACATAAAAGTATATAAATGGTAGTAAACTATGCATATTTTCTGCCTGCTATTAG
Seq C2 exon
GGGAATTCTGTATCGGCGCCTAAAAGACTTCACTGCTGCCATTGAGGACTTGGTTCTTGCTGTTGAGTTTTGTGGGATTGAAGAAGAATCTCCTCAGGGAAAGCCCCAAGATGACTCTGATGGTTTAGAGGAAGAAGCACAGACCCAAATGGTGCTCACGTACAATGATTTTGCCATTCAGTGCTTCTCCCAGGGTCTGTACAGTGAAGCTGTCATACTGCTGAACAAGGCCATAGAGAAACAAAGAGATGCAAGTGAACTGTTCATCAACAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035:ENSDART00000170677:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=58.3)
A:
NA
C2:
PF134141=TPR_11=PD(35.3=25.5),PF134141=TPR_11=PU(63.8=46.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]