HsaINT0174082 @ hg19
Intron Retention
Gene
ENSG00000167094 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:26536]
Coordinates
chr9:130485398-130486643:+
Coord C1 exon
chr9:130485398-130485612
Coord A exon
chr9:130485613-130486398
Coord C2 exon
chr9:130486399-130486643
Length
786 bp
Sequences
Splice sites
5' ss Seq
CCGGTACTG
5' ss Score
5.61
3' ss Seq
TCCCACGCCCCCCCCGACAGGGG
3' ss Score
7.82
Exon sequences
Seq C1 exon
CCCCACCTCTGCTACCGGGACCTGCACAGCGCCTTGCTGTTGAATCCCAAGCACCCGCAGGCCAGGATGCTGCTCCAGAAGATGGTGGCCCAGGCCCAGCAGGCGCGCCAAGATGCGGGGATCCTGGCTGTGCAGGGCAAGCTGCAGCACGCACTGCAGCGGATCAACCGTGCCATCGAGAACAACCCTCTGGACCCCAGTCTCTTCCTCTTCCG
Seq A exon
GTACTGCATGGGAAGGTGCTGGCCTTGGGTCCCAGGTCCTGCCCAGCCAGACTTTCTGTGTGGTTTAAGGAGAGTCCCTGACCCTCTCTGGGCCTCAGTTTCCCCAGCTAGCCTCTAACAGTCTTTCCCTACTTCCTACTGGGTTAAGGCATTGCAGAGGTGGTCTCTGTTACTGCTGGAAGAGGGATGCCAACACATGTCTCAGTTACCCCAGGAATCCTAGAGCTGCAGCCTGCAAAGCAGTTCACGCTGGGCGCTGAGCCCAGCTCAGTGGAGGAGACTTAGGCTTGAGTCTGGTCCCAGGAACTTACCACATCCTGCTGCATTTCAGGAGGGAGTGCCGCTGCCCTGGCAGGAGTGACTCCAGGGGGCGGTCCACCCAGCCAATCTCTCCCTATGCCAAGGGGCTGGGTTCAGTATCCCACAAGTGATTCAGTGACATGAGAGGCCACTGTGATTTCGGGCCAATTAACCTATCCAAACAGTGGTGGTAAAACACCTGCTTCTTGTACAAAATGCTTTAATGTAGAGACTGGCATACACCTGGCTCCCAAAAAAGAAGGTATTTTTGCAAAAAAAAAAAAATGCTCAGTGCCTAGTGGGTTATCTGAGTAGCAGTCCAGAGCTGGCCCCACGGGACAAACCTAGCAAATGAGGTGGGATCCCCACTGCCTCCATGGGTCAGGAGGCCCAGAGCCGGCAGTGGCTTGTCTGGCCACTAGCCAGTCGGTGGGGGTGCACTGGCGCTCATGTCCCTCCTGCCGTCTCCCACGCCCCCCCCGACAG
Seq C2 exon
GGGCACCATGTACCGACGGCTCCAGGAGTTCGATGGGGCAGTGGAGGACTTCCTGAAGGTGCTGGACATGGTGACCGAGGACCAGGAGGACATGGTGCGGCAGGCACAGCGCCAGCTGTTGCTGACCTACAACGACTTTGCCGTGCACTGCTACAGGCAGGGCGCCTACCAGGAGGGCGTGCTGCTGCTGAACAAGGCCCTCCGGGACGAGCAGCAGGAGAAAGGACTCTACATCAACCGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167094-TTC16:NM_144965:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF038839=DUF328=FE(59.2=100),PF134141=TPR_11=PU(62.7=58.3)
A:
NA
C2:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGCTGTTGAATCCCAA
R:
CTGTAGCAGTGCACGGCAAAG
Band lengths:
342-1128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)