GgaINT1028749 @ galGal4
Intron Retention
Gene
ENSGALG00000004992 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr17:4930807-4931118:-
Coord C1 exon
chr17:4931018-4931118
Coord A exon
chr17:4930937-4931017
Coord C2 exon
chr17:4930807-4930936
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
GCATTGTCCCTCTCTTGCAGCAT
3' ss Score
10.95
Exon sequences
Seq C1 exon
GGCCAGTGTCTGCTGGACCAGGAGCTCTACAGTGAGGCCCTGGAGGCCTTCACACATGCCGCTGAGCTGCAGCCTCACTGCAGGGTGTTCCACCAGAGGAG
Seq A exon
GTGAAGCCAGGGCTGCAGGTTGTTCAGCAGGCCAGCCCTGCCTTATTGCAGGCTCCCCATAGCATTGTCCCTCTCTTGCAG
Seq C2 exon
CATCGTGTGCCTTGCTGCCCTCGGTGAGTTCCCAGAGTTCCTCCAGATGCTTAACAGAGAACTGGAGGAGGATGTGAGGAATCCTGATATGTATGTGCTCCGTGCCTTCTTCTACAAACGCTCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992:ENSGALT00000007997:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(41.4=70.6),PF134291=TPR_15=PU(8.3=32.4)
A:
NA
C2:
PF134141=TPR_11=PD(15.7=18.2),PF134291=TPR_15=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCAGGAGCTCTACAGTG
R:
GGATTCCTCACATCCTCCTCCA
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]