GgaEX1060919 @ galGal3
Exon Skipping
Gene
ENSGALG00000004992 | TTC16
Description
NA
Coordinates
chr17:5558005-5560112:-
Coord C1 exon
chr17:5559898-5560112
Coord A exon
chr17:5559583-5559824
Coord C2 exon
chr17:5558005-5558146
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCCCTGTGTCACAGGGG
3' ss Score
9.56
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
CTGGCCCTGTGCCTCCAGGACATCCAACAGGCCCTGAAGCTGGAACCTCAGCACAGAGCTGCCCAGGTTTTGTGGCACAGGCTGGTGAGACAAGGCCAGGAGGCCAAAGCCCAGGCAGTGTTGAAGGCCTTGCGTGGAGACCTGCGTGGGGCCCTGTACGAGATCAGCTTTGCTATTGAAAGTGACCCGTTGGCTGCTGAATTCTTCACCCTCAG
Seq A exon
GGGGACCCTCCTCCGGCAGCTCAAGGACTTCAGTGCAGCCAGCAAGGACTTGGCCAGGGCTAGGGAGCTGAGTGCCCTGGGGAGCCCAGAGGCCCGGGAGGCTCAGAGGCAGCTGGTGCTCACCTACAATGATTGTGCTGTGCGCTGCTATGCCCTGGGCCAACTTGATGAGGCTGTAAAGCTCCTTGGTGAAGCTCTGCAAAATGAAAAGACAGAGCAGGGACTCTACGCCAACAGAGGAG
Seq C2 exon
ATCCTTTCCCTTGCACACCTCCTCTTTCCAAGAAAGACTGTCCAGGCTATCCTGAGGAGCTTTGCCCGACAAACCTTGGATGAAACACTTCAGAGTCCTCCAAGACTTCCATATGATGATGCCTGATGGACAGAAGCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004992-'1-7,'1-2,2-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.147
Domain overlap (PFAM):
C1:
PF134291=TPR_15=FE(82.6=100),PF134241=TPR_12=PU(12.2=13.9)
A:
PF134291=TPR_15=PD(0.1=0.0),PF134241=TPR_12=PD(86.6=86.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTCCAGGACATCCAA
R:
TTCATCCAAGGTTTGTCGGGC
Band lengths:
293-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]