MmuEX6100616 @ mm10
Exon Skipping
Gene
ENSMUSG00000039021 | Ttc16
Description
tetratricopeptide repeat domain 16 [Source:MGI Symbol;Acc:MGI:2443048]
Coordinates
chr2:32768842-32770266:-
Coord C1 exon
chr2:32770052-32770266
Coord A exon
chr2:32769098-32769342
Coord C2 exon
chr2:32768842-32768983
Length
245 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCTGCAATACGATAGGGG
3' ss Score
2.43
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GCCAAGCTCTGCTATCAGGACCTTCGAAGCGCCTTGCTCCTAGATCCCTTGCACGCACAGGCCAAAGGGCTACTCCAGAAGATGGTGGACCAGGCCAAGCAGTCTCTCCAAGATGCCAGCACCCTGGCCGTGCAGGGCAAGGTGCACCGTGCACTGAAGTGCATCAACTGTGCCATTGAGAACAATCCCCTGGATCCCAACTTCTTCTTCTTCCG
Seq A exon
GGGCACCTTGCGTAGACGGCTCCAGCAATTTGACCATGCTGTGGAAGACTTCCTGAAGGCAATGGACATGGTGACTGACACCCAGGACAACCTAGTGAAGCAGGCGCAGCGTCAGCTGCTGCTGACTTACAATGACTTTGCTGTGCACTGCTACAACCATGGTGCCTATCAGGAGGGCGTGCTGCTGCTGAACAAGGCTATCAGAGACGAGCAGAATGAGAAGGGCTTGTACATCAACCGTGGGG
Seq C2 exon
ATTGCTTCTTCCAGCTGGGCAACCTGGCCTTCGCGGAGGCTGACTACAAGCAAGCGCTGGCCCTGAGCCCGCTGGATGAAGGAGCCAACTTGCGCATGGGTGTGCTGCAGGAGAAGCTGGGCTTCTGCCAGCAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039021-'13-16,'13-14,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(62.7=58.3)
A:
PF134141=TPR_11=PD(35.8=28.9),PF134141=TPR_11=PU(64.7=53.0)
C2:
PF134141=TPR_11=PD(33.8=47.9),PF134141=TPR_11=PU(20.0=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCAGGACCTTCGAAGCGC
R:
GCAAGTTGGCTCCTTCATCCA
Band lengths:
297-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types